J3_9DFE_066

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAC*GGU*GCC

Length

11 nucleotides

Bulged bases

9DFE|1|2a|G|1003

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|2a|G|1002
9DFE|1|2a|G|1003
9DFE|1|2a|A|1004
9DFE|1|2a|A|1005
9DFE|1|2a|C|1006
*
9DFE|1|2a|G|1023
9DFE|1|2a|G|1024
9DFE|1|2a|U|1025
*
9DFE|1|2a|G|1036
9DFE|1|2a|C|1037
9DFE|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains