J3_9DOV_006
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 9DOV|1|A1|A|398, 9DOV|1|A1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DOV_006 not in the Motif Atlas
- Homologous match to J3_9PN5_006
- Geometric discrepancy: 0.0638
- The information below is about J3_9PN5_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.4
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9DOV|1|A1|A|369
9DOV|1|A1|U|370
9DOV|1|A1|G|371
9DOV|1|A1|A|372
9DOV|1|A1|A|373
9DOV|1|A1|A|374
9DOV|1|A1|A|375
9DOV|1|A1|G|376
9DOV|1|A1|A|377
9DOV|1|A1|A|378
9DOV|1|A1|C|379
*
9DOV|1|A1|G|390
9DOV|1|A1|A|391
9DOV|1|A1|G|392
9DOV|1|A1|U|393
9DOV|1|A1|G|394
9DOV|1|A1|A|395
9DOV|1|A1|A|396
9DOV|1|A1|A|397
9DOV|1|A1|A|398
9DOV|1|A1|A|399
9DOV|1|A1|G|400
9DOV|1|A1|U|401
9DOV|1|A1|A|402
9DOV|1|A1|C|403
9DOV|1|A1|G|404
*
9DOV|1|A4|C|19
9DOV|1|A4|U|20
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: