J3_9DOV_011

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GACGG*CCGCUAAGG*CACC

Length

18 nucleotides

Bulged bases

9DOV|1|A1|A|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|G|1230
9DOV|1|A1|A|1231
9DOV|1|A1|C|1232
9DOV|1|A1|G|1233
9DOV|1|A1|G|1234
*
9DOV|1|A1|C|1254
9DOV|1|A1|C|1255
9DOV|1|A1|G|1256
9DOV|1|A1|C|1257
9DOV|1|A1|U|1258
9DOV|1|A1|A|1259
9DOV|1|A1|A|1260
9DOV|1|A1|G|1261
9DOV|1|A1|G|1262
*
9DOV|1|A1|C|1277
9DOV|1|A1|A|1278
9DOV|1|A1|C|1279
9DOV|1|A1|C|1280

Current chains

Chain A1

25S rRNA

Nearby chains