J3_9DOV_014
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DOV_014 not in the Motif Atlas
- Homologous match to J3_9PN5_014
- Geometric discrepancy: 0.0497
- The information below is about J3_9PN5_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.4
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9DOV|1|A1|U|1526
9DOV|1|A1|C|1527
9DOV|1|A1|G|1528
9DOV|1|A1|A|1529
9DOV|1|A1|U|1530
9DOV|1|A1|C|1531
*
9DOV|1|A1|G|1591
9DOV|1|A1|G|1592
9DOV|1|A1|A|1593
9DOV|1|A1|A|1594
9DOV|1|A1|U|1595
*
9DOV|1|A1|A|1612
9DOV|1|A1|A|1613
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AX
- 60S ribosomal protein L25
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ak
- Large ribosomal subunit protein eL38
- Chain Al
- 60S ribosomal protein L39
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