J3_9DOV_022

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9DOV|1|A1|A|2887, 9DOV|1|A1|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|2886
9DOV|1|A1|A|2887
9DOV|1|A1|U|2888
9DOV|1|A1|C|2889
*
9DOV|1|A1|G|2914
9DOV|1|A1|U|2915
9DOV|1|A1|U|2916
*
9DOV|1|A1|A|2930
9DOV|1|A1|C|2931
9DOV|1|A1|U|2932
9DOV|1|A1|A|2933
9DOV|1|A1|A|2934
9DOV|1|A1|U|2935
9DOV|1|A1|A|2936

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A

Chain AV

60S ribosomal protein L23-A