J3_9DOV_022
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9DOV|1|A1|A|2887, 9DOV|1|A1|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DOV_022 not in the Motif Atlas
- Homologous match to J3_9PN5_022
- Geometric discrepancy: 0.0454
- The information below is about J3_9PN5_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.4
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9DOV|1|A1|U|2886
9DOV|1|A1|A|2887
9DOV|1|A1|U|2888
9DOV|1|A1|C|2889
*
9DOV|1|A1|G|2914
9DOV|1|A1|U|2915
9DOV|1|A1|U|2916
*
9DOV|1|A1|A|2930
9DOV|1|A1|C|2931
9DOV|1|A1|U|2932
9DOV|1|A1|A|2933
9DOV|1|A1|A|2934
9DOV|1|A1|U|2935
9DOV|1|A1|A|2936
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AO
- 60S ribosomal protein L16-A
- Chain AV
- 60S ribosomal protein L23-A
Coloring options: