J3_9DOV_023

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

9DOV|1|A1|A|3172, 9DOV|1|A1|G|3173, 9DOV|1|A1|A|3215, 9DOV|1|A1|G|3216, 9DOV|1|A1|C|3217, 9DOV|1|A1|G|3219, 9DOV|1|A1|A|3268, 9DOV|1|A1|U|3270, 9DOV|1|A1|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|3171
9DOV|1|A1|A|3172
9DOV|1|A1|G|3173
9DOV|1|A1|A|3174
9DOV|1|A1|U|3175
9DOV|1|A1|G|3176
*
9DOV|1|A1|C|3212
9DOV|1|A1|A|3213
9DOV|1|A1|U|3214
9DOV|1|A1|A|3215
9DOV|1|A1|G|3216
9DOV|1|A1|C|3217
9DOV|1|A1|A|3218
9DOV|1|A1|G|3219
9DOV|1|A1|G|3220
*
9DOV|1|A1|C|3265
9DOV|1|A1|G|3266
9DOV|1|A1|A|3267
9DOV|1|A1|A|3268
9DOV|1|A1|U|3269
9DOV|1|A1|U|3270
9DOV|1|A1|G|3271
9DOV|1|A1|C|3272
9DOV|1|A1|A|3273
9DOV|1|A1|A|3274
9DOV|1|A1|U|3275
9DOV|1|A1|G|3276
9DOV|1|A1|U|3277
9DOV|1|A1|C|3278
9DOV|1|A1|A|3279

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L6-A

Chain AM

60S ribosomal protein L14-A

Chain AO

60S ribosomal protein L16-A

Chain AP

60S ribosomal protein L17-A

Chain Af

60S ribosomal protein L33-A