J3_9DOV_026
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 9DOV|1|A4|U|60, 9DOV|1|A4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DOV_026 not in the Motif Atlas
- Homologous match to J3_9PN5_026
- Geometric discrepancy: 0.0466
- The information below is about J3_9PN5_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.4
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9DOV|1|A4|A|44
9DOV|1|A4|C|45
*
9DOV|1|A4|G|58
9DOV|1|A4|A|59
9DOV|1|A4|U|60
9DOV|1|A4|A|61
9DOV|1|A4|C|62
9DOV|1|A4|G|63
9DOV|1|A4|U|64
*
9DOV|1|A4|A|96
9DOV|1|A4|A|97
9DOV|1|A4|U|98
9DOV|1|A4|C|99
9DOV|1|A4|U|100
Current chains
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AX
- 60S ribosomal protein L25
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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