J3_9DOV_028

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

9DOV|1|B5|A|226, 9DOV|1|B5|U|227, 9DOV|1|B5|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|A|213
9DOV|1|B5|G|214
9DOV|1|B5|A|215
9DOV|1|B5|U|216
9DOV|1|B5|A|217
9DOV|1|B5|A|218
9DOV|1|B5|A|219
9DOV|1|B5|A|220
9DOV|1|B5|A|221
9DOV|1|B5|A|222
9DOV|1|B5|U|223
9DOV|1|B5|C|224
9DOV|1|B5|A|225
9DOV|1|B5|A|226
9DOV|1|B5|U|227
9DOV|1|B5|G|228
*
9DOV|1|B5|C|237
9DOV|1|B5|U|238
9DOV|1|B5|C|239
9DOV|1|B5|U|240
9DOV|1|B5|U|241
9DOV|1|B5|U|242
9DOV|1|B5|G|243
*
9DOV|1|B5|C|250
9DOV|1|B5|A|251
9DOV|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A