J3_9DOV_036
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 9DOV|1|B5|G|1199, 9DOV|1|B5|G|1201, 9DOV|1|B5|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|B5|C|1180
9DOV|1|B5|U|1181
9DOV|1|B5|U|1182
9DOV|1|B5|A|1183
9DOV|1|B5|A|1184
9DOV|1|B5|U|1185
9DOV|1|B5|U|1186
9DOV|1|B5|U|1187
*
9DOV|1|B5|G|1198
9DOV|1|B5|G|1199
9DOV|1|B5|G|1200
9DOV|1|B5|G|1201
9DOV|1|B5|A|1202
9DOV|1|B5|A|1203
9DOV|1|B5|A|1204
9DOV|1|B5|C|1205
9DOV|1|B5|U|1206
9DOV|1|B5|C|1207
9DOV|1|B5|A|1208
9DOV|1|B5|C|1209
*
9DOV|1|B5|G|1454
9DOV|1|B5|G|1455
9DOV|1|B5|C|1456
9DOV|1|B5|C|1457
9DOV|1|B5|G|1458
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- Small ribosomal subunit protein uS19
- Chain BS
- 40S ribosomal protein S18-A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
- Chain EC
- TSV IRES RNA
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