J3_9DOV_043

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCAG*CAGC*GUGGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|EC|C|6894
9DOV|1|EC|C|6895
9DOV|1|EC|A|6896
9DOV|1|EC|G|6897
*
9DOV|1|EC|C|6917
9DOV|1|EC|A|6918
9DOV|1|EC|G|6919
9DOV|1|EC|C|6920
*
9DOV|1|EC|G|6933
9DOV|1|EC|U|6934
9DOV|1|EC|G|6935
9DOV|1|EC|G|6936
9DOV|1|EC|G|6937

Current chains

Chain EC

TSV IRES RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BP

Small ribosomal subunit protein uS19