J3_9DP7_043

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CACUG*CGUGCUGG*C(OMG)AG

Length

17 nucleotides

Bulged bases

9DP7|1|B5|U|1473, 9DP7|1|B5|G|1539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|C|1470
9DP7|1|B5|A|1471
9DP7|1|B5|C|1472
9DP7|1|B5|U|1473
9DP7|1|B5|G|1474
*
9DP7|1|B5|C|1533
9DP7|1|B5|G|1534
9DP7|1|B5|U|1535
9DP7|1|B5|G|1536
9DP7|1|B5|C|1537
9DP7|1|B5|U|1538
9DP7|1|B5|G|1539
9DP7|1|B5|G|1540
*
9DP7|1|B5|C|1571
9DP7|1|B5|OMG|1572
9DP7|1|B5|A|1573
9DP7|1|B5|G|1574

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A

Chain BZ

Small ribosomal subunit protein eS25A

Chain EC

TSV IRES RNA