J3_9E0N_006

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

9E0N|1|A|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E0N_006 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.1286

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9E0N|1|A|G|378
9E0N|1|A|G|379
9E0N|1|A|A|380
9E0N|1|A|A|381
9E0N|1|A|A|382
*
9E0N|1|A|U|398
9E0N|1|A|G|399
9E0N|1|A|C|400
9E0N|1|A|C|401
9E0N|1|A|G|402
9E0N|1|A|U|403
9E0N|1|A|A|404
9E0N|1|A|G|405
9E0N|1|A|A|406
9E0N|1|A|C|407
*
9E0N|1|A|G|419
9E0N|1|A|G|420
9E0N|1|A|U|421
9E0N|1|A|A|422
9E0N|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain V

Large ribosomal subunit protein uL24