J3_9E0N_007

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

9E0N|1|A|U|801, 9E0N|1|A|A|907, 9E0N|1|A|A|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E0N_007 not in the Motif Atlas

Geometric match to J3_5J7L_038

Geometric discrepancy: 0.1851

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9E0N|1|A|U|798
9E0N|1|A|G|799
9E0N|1|A|A|800
9E0N|1|A|U|801
9E0N|1|A|C|802
9E0N|1|A|U|803
9E0N|1|A|A|804
*
9E0N|1|A|U|888
9E0N|1|A|A|889
9E0N|1|A|G|890
*
9E0N|1|A|C|906
9E0N|1|A|A|907
9E0N|1|A|A|908
9E0N|1|A|A|909

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL34

Chain C

Large ribosomal subunit protein uL2

Chain E

Large ribosomal subunit protein uL4