J3_9E0P_002
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- GC*GUGAAAAGUAC*GAGUGAAAGAGUACC
- Length
- 28 nucleotides
- Bulged bases
- 9E0P|1|A|G|591, 9E0P|1|A|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_002 not in the Motif Atlas
- Geometric match to J3_8P9A_047
- Geometric discrepancy: 0.1292
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9E0P|1|A|G|27
9E0P|1|A|C|28
*
9E0P|1|A|G|562
9E0P|1|A|U|563
9E0P|1|A|G|564
9E0P|1|A|A|565
9E0P|1|A|A|566
9E0P|1|A|A|567
9E0P|1|A|A|568
9E0P|1|A|G|569
9E0P|1|A|U|570
9E0P|1|A|A|571
9E0P|1|A|C|572
*
9E0P|1|A|G|583
9E0P|1|A|A|584
9E0P|1|A|G|585
9E0P|1|A|U|586
9E0P|1|A|G|587
9E0P|1|A|A|588
9E0P|1|A|A|589
9E0P|1|A|A|590
9E0P|1|A|G|591
9E0P|1|A|A|592
9E0P|1|A|G|593
9E0P|1|A|U|594
9E0P|1|A|A|595
9E0P|1|A|C|596
9E0P|1|A|C|597
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain R
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein uL22
- Chain V
- Large ribosomal subunit protein uL24
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