J3_9E0P_004

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

9E0P|1|A|U|69, 9E0P|1|A|A|71

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E0P_004 not in the Motif Atlas

Geometric match to J3_5J7L_037

Geometric discrepancy: 0.1378

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

9E0P|1|A|A|53
9E0P|1|A|C|54
*
9E0P|1|A|G|67
9E0P|1|A|A|68
9E0P|1|A|U|69
9E0P|1|A|A|70
9E0P|1|A|A|71
9E0P|1|A|G|72
9E0P|1|A|C|73
*
9E0P|1|A|G|107
9E0P|1|A|A|108
9E0P|1|A|U|109
9E0P|1|A|G|110
9E0P|1|A|U|111

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL34

Chain U

Large ribosomal subunit protein uL23

Chain Z

Large ribosomal subunit protein uL29