J3_9E0P_007

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

9E0P|1|A|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E0P_007 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.1329

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9E0P|1|A|G|378
9E0P|1|A|G|379
9E0P|1|A|A|380
9E0P|1|A|A|381
9E0P|1|A|A|382
*
9E0P|1|A|U|398
9E0P|1|A|G|399
9E0P|1|A|C|400
9E0P|1|A|C|401
9E0P|1|A|G|402
9E0P|1|A|U|403
9E0P|1|A|A|404
9E0P|1|A|G|405
9E0P|1|A|A|406
9E0P|1|A|C|407
*
9E0P|1|A|G|419
9E0P|1|A|G|420
9E0P|1|A|U|421
9E0P|1|A|A|422
9E0P|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain V

Large ribosomal subunit protein uL24