J3_9E0P_015

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E0P_015 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2568

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

9E0P|1|A|U|1646
9E0P|1|A|G|1647
9E0P|1|A|A|1648
9E0P|1|A|C|1649
9E0P|1|A|G|1650
*
9E0P|1|A|C|1784
9E0P|1|A|C|1785
*
9E0P|1|A|G|1788
9E0P|1|A|A|1789
9E0P|1|A|A|1790
9E0P|1|A|A|1791
9E0P|1|A|A|1792
9E0P|1|A|G|1793

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2