J3_9E0P_020

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CCC*GAUUGAU*AACCG

Length

15 nucleotides

Bulged bases

9E0P|1|A|U|3054, 9E0P|1|A|A|3056, 9E0P|1|A|C|3105, 9E0P|1|A|C|3106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E0P|1|A|C|3035
9E0P|1|A|C|3036
9E0P|1|A|C|3037
*
9E0P|1|A|G|3051
9E0P|1|A|A|3052
9E0P|1|A|U|3053
9E0P|1|A|U|3054
9E0P|1|A|G|3055
9E0P|1|A|A|3056
9E0P|1|A|U|3057
*
9E0P|1|A|A|3103
9E0P|1|A|A|3104
9E0P|1|A|C|3105
9E0P|1|A|C|3106
9E0P|1|A|G|3107

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3

Chain O

Large ribosomal subunit protein bL17