J3_9E0P_027
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_027 not in the Motif Atlas
- Geometric match to J3_4LFB_002
- Geometric discrepancy: 0.2002
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
9E0P|1|a|C|918
9E0P|1|a|A|919
9E0P|1|a|A|920
9E0P|1|a|G|921
*
9E0P|1|a|C|1326
9E0P|1|a|U|1327
9E0P|1|a|A|1328
9E0P|1|a|G|1329
9E0P|1|a|U|1330
9E0P|1|a|A|1331
9E0P|1|a|A|1332
*
9E0P|1|a|U|1355
9E0P|1|a|G|1356
9E0P|1|a|A|1357
9E0P|1|a|A|1358
9E0P|1|a|U|1359
9E0P|1|a|A|1360
9E0P|1|a|C|1361
9E0P|1|a|G|1362
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- Small ribosomal subunit protein uS9
Coloring options: