J3_9E0P_036

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

9E0P|1|a|U|1164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E0P_036 not in the Motif Atlas

Geometric match to J3_5J7L_054

Geometric discrepancy: 0.2575

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9E0P|1|a|U|1096
9E0P|1|a|G|1097
9E0P|1|a|U|1098
*
9E0P|1|a|A|1136
9E0P|1|a|G|1137
9E0P|1|a|A|1138
9E0P|1|a|C|1139
9E0P|1|a|U|1140
9E0P|1|a|G|1141
9E0P|1|a|C|1142
*
9E0P|1|a|G|1156
9E0P|1|a|A|1157
9E0P|1|a|G|1158
9E0P|1|a|G|1159
9E0P|1|a|A|1160
9E0P|1|a|A|1161
9E0P|1|a|G|1162
9E0P|1|a|G|1163
9E0P|1|a|U|1164
9E0P|1|a|G|1165

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9

Chain j

Small ribosomal subunit protein uS10