J3_9E16_004
3D structure
- PDB id
- 9E16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 9E16|1|I|U|537, 9E16|1|I|U|545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E16_004 not in the Motif Atlas
- Homologous match to J3_8B0X_033
- Geometric discrepancy: 0.2055
- The information below is about J3_8B0X_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9E16|1|I|C|32
9E16|1|I|U|33
9E16|1|I|U|34
9E16|1|I|G|35
*
9E16|1|I|C|534
9E16|1|I|G|535
9E16|1|I|A|536
9E16|1|I|U|537
9E16|1|I|A|538
9E16|1|I|G|539
9E16|1|I|C|540
9E16|1|I|G|541
9E16|1|I|G|542
9E16|1|I|A|543
9E16|1|I|U|544
9E16|1|I|U|545
9E16|1|I|A|546
9E16|1|I|G|547
9E16|1|I|U|548
9E16|1|I|A|549
9E16|1|I|C|550
*
9E16|1|I|G|557
9E16|1|I|G|558
9E16|1|I|A|559
9E16|1|I|A|560
9E16|1|I|U|561
9E16|1|I|G|562
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Ribosome-tunnel occlusion factor (RTOF)
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
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