J3_9E16_010

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E16_010 not in the Motif Atlas

Homologous match to J3_8B0X_017

Geometric discrepancy: 0.0641

The information below is about J3_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.3

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9E16|1|I|C|827
9E16|1|I|A|828
9E16|1|I|G|829
*
9E16|1|I|C|861
9E16|1|I|G|862
9E16|1|I|A|863
9E16|1|I|A|864
9E16|1|I|C|865
*
9E16|1|I|G|889
9E16|1|I|A|890
9E16|1|I|U|891
9E16|1|I|G|892

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2