J3_9E16_019

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCAA*UGGCGAG*CACAAG

Length

18 nucleotides

Bulged bases

9E16|1|I|C|2572, 9E16|1|I|A|2574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E16_019 not in the Motif Atlas

Homologous match to J3_8B0X_037

Geometric discrepancy: 0.5001

The information below is about J3_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E16|1|I|C|2533
9E16|1|I|U|2534
9E16|1|I|C|2535
9E16|1|I|A|2536
9E16|1|I|A|2537
*
9E16|1|I|U|2555
9E16|1|I|G|2556
9E16|1|I|G|2557
9E16|1|I|C|2558
9E16|1|I|G|2559
9E16|1|I|A|2560
9E16|1|I|G|2561
*
9E16|1|I|C|2570
9E16|1|I|A|2571
9E16|1|I|C|2572
9E16|1|I|A|2573
9E16|1|I|A|2574
9E16|1|I|G|2575

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27