J3_9E1S_011

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CAGGAG*UUGAAAGAGUG*CUCACUG

Length

24 nucleotides

Bulged bases

9E1S|1|I|U|1211, 9E1S|1|I|A|1213, 9E1S|1|I|A|1217, 9E1S|1|I|G|1218

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E1S|1|I|C|1182
9E1S|1|I|A|1183
9E1S|1|I|G|1184
9E1S|1|I|G|1185
9E1S|1|I|A|1186
9E1S|1|I|G|1187
*
9E1S|1|I|U|1210
9E1S|1|I|U|1211
9E1S|1|I|G|1212
9E1S|1|I|A|1213
9E1S|1|I|A|1214
9E1S|1|I|A|1215
9E1S|1|I|G|1216
9E1S|1|I|A|1217
9E1S|1|I|G|1218
9E1S|1|I|U|1219
9E1S|1|I|G|1220
*
9E1S|1|I|C|1229
9E1S|1|I|U|1230
9E1S|1|I|C|1231
9E1S|1|I|A|1232
9E1S|1|I|C|1233
9E1S|1|I|U|1234
9E1S|1|I|G|1235

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein bL36