J3_9E1S_018
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- GCC*GAUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9E1S|1|I|A|2626, 9E1S|1|I|U|2628, 9E1S|1|I|A|2664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E1S_018 not in the Motif Atlas
- Homologous match to J3_8B0X_036
- Geometric discrepancy: 0.0857
- The information below is about J3_8B0X_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9E1S|1|I|G|2520
9E1S|1|I|C|2521
9E1S|1|I|C|2522
*
9E1S|1|I|G|2622
9E1S|1|I|A|2623
9E1S|1|I|U|2624
9E1S|1|I|U|2625
9E1S|1|I|A|2626
9E1S|1|I|G|2627
9E1S|1|I|U|2628
9E1S|1|I|G|2629
9E1S|1|I|A|2630
9E1S|1|I|U|2631
9E1S|1|I|C|2632
9E1S|1|I|C|2633
*
9E1S|1|I|G|2659
9E1S|1|I|C|2660
9E1S|1|I|U|2661
9E1S|1|I|C|2662
9E1S|1|I|A|2663
9E1S|1|I|A|2664
9E1S|1|I|C|2665
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain b
- 50S ribosomal protein bL33-c minus
Coloring options: