J3_9E6Q_003
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACUAGUA(OMC)*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9E6Q|1|1|C|27, 9E6Q|1|1|U|479, 9E6Q|1|1|U|487
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9E6Q|1|1|C|25
9E6Q|1|1|U|26
9E6Q|1|1|C|27
9E6Q|1|1|G|28
*
9E6Q|1|1|C|476
9E6Q|1|1|G|477
9E6Q|1|1|A|478
9E6Q|1|1|U|479
9E6Q|1|1|A|480
9E6Q|1|1|G|481
9E6Q|1|1|C|482
9E6Q|1|1|G|483
9E6Q|1|1|C|484
9E6Q|1|1|A|485
9E6Q|1|1|C|486
9E6Q|1|1|U|487
9E6Q|1|1|A|488
9E6Q|1|1|G|489
9E6Q|1|1|U|490
9E6Q|1|1|A|491
9E6Q|1|1|OMC|492
*
9E6Q|1|1|G|499
9E6Q|1|1|G|500
9E6Q|1|1|A|501
9E6Q|1|1|A|502
9E6Q|1|1|A|503
9E6Q|1|1|G|504
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4
- Chain AV
- Large ribosomal subunit protein uL24
- Chain Ad
- Large ribosomal subunit protein eL37
- Chain Af
- Large ribosomal subunit protein eL39
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