J3_9E6Q_006

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGAAG*CGCCGUAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9E6Q|1|1|U|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E6Q_006 not in the Motif Atlas

Geometric match to J3_8VTW_041

Geometric discrepancy: 0.083

The information below is about J3_8VTW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9E6Q|1|1|C|324
9E6Q|1|1|G|325
9E6Q|1|1|A|326
9E6Q|1|1|A|327
9E6Q|1|1|G|328
*
9E6Q|1|1|C|344
9E6Q|1|1|G|345
9E6Q|1|1|C|346
9E6Q|1|1|C|347
9E6Q|1|1|G|348
9E6Q|1|1|U|349
9E6Q|1|1|A|350
9E6Q|1|1|G|351
9E6Q|1|1|A|352
9E6Q|1|1|G|353
*
9E6Q|1|1|C|365
9E6Q|1|1|G|366
9E6Q|1|1|U|367
9E6Q|1|1|A|368
9E6Q|1|1|G|369

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4

Chain AV

Large ribosomal subunit protein uL24