J3_9E6Q_008

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CAG*CGAAG*CAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9E6Q|1|1|C|815
9E6Q|1|1|A|816
9E6Q|1|1|G|817
*
9E6Q|1|1|C|849
9E6Q|1|1|G|850
9E6Q|1|1|A|851
9E6Q|1|1|A|852
9E6Q|1|1|G|853
*
9E6Q|1|1|C|878
9E6Q|1|1|A|879
9E6Q|1|1|U|880
9E6Q|1|1|G|881

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AA

Large ribosomal subunit protein uL2

Chain AQ

Large ribosomal subunit protein eL19

Chain Ac

Large ribosomal subunit protein eL34

Chain Ai

Large ribosomal subunit protein eL43