J3_9E6Q_013
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGACG*CC*GAAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E6Q_013 not in the Motif Atlas
- Homologous match to J3_4V9F_017
- Geometric discrepancy: 0.1053
- The information below is about J3_4V9F_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9E6Q|1|1|C|1574
9E6Q|1|1|G|1575
9E6Q|1|1|A|1576
9E6Q|1|1|C|1577
9E6Q|1|1|G|1578
*
9E6Q|1|1|C|1706
9E6Q|1|1|C|1707
*
9E6Q|1|1|G|1711
9E6Q|1|1|A|1712
9E6Q|1|1|A|1713
9E6Q|1|1|A|1714
9E6Q|1|1|A|1715
9E6Q|1|1|G|1716
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AA
- Large ribosomal subunit protein uL2
- Chain Ac
- Large ribosomal subunit protein eL34
- Chain Ai
- Large ribosomal subunit protein eL43
Coloring options: