J3_9E6Q_016
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- C(OMU)C*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9E6Q|1|1|A|2446, 9E6Q|1|1|A|2448
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E6Q_016 not in the Motif Atlas
- Homologous match to J3_4V9F_008
- Geometric discrepancy: 0.1176
- The information below is about J3_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9E6Q|1|1|C|2407
9E6Q|1|1|OMU|2408
9E6Q|1|1|C|2409
*
9E6Q|1|1|G|2433
9E6Q|1|1|A|2434
9E6Q|1|1|G|2435
*
9E6Q|1|1|C|2444
9E6Q|1|1|A|2445
9E6Q|1|1|A|2446
9E6Q|1|1|A|2447
9E6Q|1|1|A|2448
9E6Q|1|1|G|2449
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- Large ribosomal subunit protein uL5
- Chain AO
- Large ribosomal subunit protein uL18
- Chain AS
- Large ribosomal subunit protein eL21
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