J3_9E6Q_018

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUC*GGUUGAU*AAUCG

Length

15 nucleotides

Bulged bases

9E6Q|1|1|U|2952, 9E6Q|1|1|A|2954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E6Q|1|1|C|2933
9E6Q|1|1|U|2934
9E6Q|1|1|C|2935
*
9E6Q|1|1|G|2949
9E6Q|1|1|G|2950
9E6Q|1|1|U|2951
9E6Q|1|1|U|2952
9E6Q|1|1|G|2953
9E6Q|1|1|A|2954
9E6Q|1|1|U|2955
*
9E6Q|1|1|A|3009
9E6Q|1|1|A|3010
9E6Q|1|1|U|3011
9E6Q|1|1|C|3012
9E6Q|1|1|G|3013

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AT

Large ribosomal subunit protein uL22

Chain Aa

Large ribosomal subunit protein eL31