J3_9E7E_002
3D structure
- PDB id
- 9E7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of HIV-1 RRE SLII A31CG39C mutant in complex with Fab BL3-6
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UGGGCG*CCGGUACACGCC*GAUA
- Length
- 22 nucleotides
- Bulged bases
- 9E7E|1|C|G|10, 9E7E|1|C|U|64
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_90186.1
- Basepair signature
- cWW-cWW-F-F-cWW-cWW-cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
9E7E|1|C|U|8
9E7E|1|C|G|9
9E7E|1|C|G|10
9E7E|1|C|G|11
9E7E|1|C|C|12
9E7E|1|C|G|13
*
9E7E|1|C|C|31
9E7E|1|C|C|32
9E7E|1|C|G|33
9E7E|1|C|G|34
9E7E|1|C|U|35
9E7E|1|C|A|36
9E7E|1|C|C|37
9E7E|1|C|A|38
9E7E|1|C|C|39
9E7E|1|C|G|40
9E7E|1|C|C|41
9E7E|1|C|C|42
*
9E7E|1|C|G|62
9E7E|1|C|A|63
9E7E|1|C|U|64
9E7E|1|C|A|65
Current chains
- Chain C
- Rev Response Element SLII A31C/G39C
Nearby chains
No other chains within 10ÅColoring options: