J3_9EBB_009
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAUCUA*UAG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9EBB|1|I|U|815, 9EBB|1|I|A|921, 9EBB|1|I|A|922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EBB_009 not in the Motif Atlas
- Homologous match to J3_8B0X_016
- Geometric discrepancy: 0.0773
- The information below is about J3_8B0X_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9EBB|1|I|U|812
9EBB|1|I|G|813
9EBB|1|I|A|814
9EBB|1|I|U|815
9EBB|1|I|C|816
9EBB|1|I|U|817
9EBB|1|I|A|818
*
9EBB|1|I|U|902
9EBB|1|I|A|903
9EBB|1|I|G|904
*
9EBB|1|I|C|920
9EBB|1|I|A|921
9EBB|1|I|A|922
9EBB|1|I|A|923
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein bL34
- Chain C
- 50S ribosomal protein L2
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