J3_9EBB_012

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9EBB|1|I|A|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EBB_012 not in the Motif Atlas

Homologous match to J3_8B0X_018

Geometric discrepancy: 0.1591

The information below is about J3_8B0X_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9EBB|1|I|C|1429
9EBB|1|I|G|1430
9EBB|1|I|A|1431
9EBB|1|I|A|1432
9EBB|1|I|A|1433
9EBB|1|I|G|1434
*
9EBB|1|I|C|1860
9EBB|1|I|A|1861
9EBB|1|I|G|1862
*
9EBB|1|I|C|1874
9EBB|1|I|A|1875
9EBB|1|I|A|1876
9EBB|1|I|G|1877

Current chains

Chain I

23S ribosomal RNA

Nearby chains