J3_9EBB_014

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

9EBB|1|I|A|1515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EBB_014 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1655

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.3

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9EBB|1|I|U|1475
9EBB|1|I|C|1476
9EBB|1|I|G|1477
9EBB|1|I|G|1478
9EBB|1|I|G|1479
9EBB|1|I|A|1480
9EBB|1|I|C|1481
*
9EBB|1|I|G|1512
9EBB|1|I|A|1513
9EBB|1|I|C|1514
9EBB|1|I|A|1515
9EBB|1|I|A|1516
*
9EBB|1|I|U|1533
9EBB|1|I|A|1534

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23