J3_9EBB_016
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGACG*CC*GAAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EBB_016 not in the Motif Atlas
- Geometric match to J3_9E6Q_013
- Geometric discrepancy: 0.2388
- The information below is about J3_9E6Q_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.3
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9EBB|1|I|U|1663
9EBB|1|I|G|1664
9EBB|1|I|A|1665
9EBB|1|I|C|1666
9EBB|1|I|G|1667
*
9EBB|1|I|C|1801
9EBB|1|I|C|1802
*
9EBB|1|I|G|1805
9EBB|1|I|A|1806
9EBB|1|I|A|1807
9EBB|1|I|A|1808
9EBB|1|I|A|1809
9EBB|1|I|G|1810
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: