J3_9EBB_024
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 9EBB|1|a|A|644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EBB_024 not in the Motif Atlas
- Homologous match to J3_8B0X_028
- Geometric discrepancy: 0.1042
- The information below is about J3_8B0X_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.7
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9EBB|1|a|U|577
9EBB|1|a|G|578
9EBB|1|a|G|579
*
9EBB|1|a|C|642
9EBB|1|a|U|643
9EBB|1|a|A|644
9EBB|1|a|G|645
9EBB|1|a|A|646
*
9EBB|1|a|U|742
9EBB|1|a|G|743
9EBB|1|a|A|744
9EBB|1|a|C|745
9EBB|1|a|G|746
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
Coloring options: