Motif J3_17385.7 Version J3_17385.7 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-12 | 3-4 | 5-10 | 6-9 | 6-11 | 7-8 | 9-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_1KUQ_002 | 1KUQ | 0.1024 | 1 | B | 16S RIBOSOMAL RNA FRAGMENT | C | 4 | G | 5 | G | 6 | * | C | 15 | U | 16 | G | 18 | A | 19 | * | U | 50 | G | 51 | A | 52 | C | 53 | G | 54 | cWW | cWW | tWH | tHS | cWW | cWW | ncSH |
| 2 | J3_4LFB_015 | 4LFB | 0.0579 | 1 | A | SSU rRNA | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | A | 655 | * | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | cWW | cWW | tWH | tHS | cWW | cWW | |
| 3 | J3_8B0X_028 | 8B0X | 0.0000 | 1 | A | SSU rRNA | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | A | 655 | * | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | cWW | cWW | tWH | tHS | cWW | cWW | |
| 4 | J3_9H3G_031 | 9H3G | 0.4393 | 2 | h1 | SSU rRNA | U | 635 | G | 636 | A | 637 | * | U | 862 | A | 863 | A | 866 | G | 867 | * | C | 963 | A | 964 | U | 965 | U | 966 | A | 967 | cWW | cWW | ntSH | cWW | cWW | ||
| 5 | J3_9PN5_031 | 9PN5 | 0.4402 | 2 | B5 | SSU rRNA | U | 633 | G | 634 | A | 635 | * | U | 861 | A | 862 | A | 865 | G | 866 | * | C | 962 | A | 963 | U | 964 | U | 965 | A | 966 | cWW | cWW | ntSH | cWW | cWW | ||
| 6 | J3_8CRE_074 | 8CRE | 0.4858 | 2 | CM | SSU rRNA | U | 631 | G | 632 | A | 633 | * | U | 846 | A | 847 | A | 850 | G | 851 | * | C | 947 | A | 948 | U | 949 | U | 950 | A | 951 | cWW | cWW | ntWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGG*CUAGA*UGACG | 2 |
| UGA*UAAUAG*CAUUA | 2 |
| CGG*CUUGA*UGACG | 1 |
| UGA*UAACAG*CAUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*UAG*GAC | 2 |
| G*AAUA*AUU | 2 |
| G*UUG*GAC | 1 |
| G*AACA*AUU | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Heat map statistics
- Min 0.05 | Avg 0.28 | Max 0.53
Coloring options: