J3_9EBB_025
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UG*CACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9EBB|1|a|U|714
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EBB_025 not in the Motif Atlas
- Homologous match to J3_8B0X_003
- Geometric discrepancy: 0.3981
- The information below is about J3_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9EBB|1|a|U|663
9EBB|1|a|G|664
*
9EBB|1|a|C|708
9EBB|1|a|A|709
9EBB|1|a|C|710
9EBB|1|a|C|711
9EBB|1|a|G|712
9EBB|1|a|G|713
9EBB|1|a|U|714
9EBB|1|a|G|715
9EBB|1|a|G|716
*
9EBB|1|a|C|723
9EBB|1|a|G|724
9EBB|1|a|G|725
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain o
- 30S ribosomal protein S15
- Chain r
- Small ribosomal subunit protein bS18
Coloring options: