J3_9EBB_026
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAG*CGUAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9EBB|1|a|U|864, 9EBB|1|a|A|866
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EBB_026 not in the Motif Atlas
- Homologous match to J3_8B0X_004
- Geometric discrepancy: 0.1333
- The information below is about J3_8B0X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9EBB|1|a|C|817
9EBB|1|a|U|818
9EBB|1|a|A|819
9EBB|1|a|G|820
*
9EBB|1|a|C|850
9EBB|1|a|G|851
9EBB|1|a|U|852
9EBB|1|a|A|853
9EBB|1|a|G|854
*
9EBB|1|a|C|861
9EBB|1|a|A|862
9EBB|1|a|U|863
9EBB|1|a|U|864
9EBB|1|a|A|865
9EBB|1|a|A|866
9EBB|1|a|G|867
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
Coloring options: