J3_9EC3_007
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- GGAAG*UGCCGUAGAC*GGUAC
- Length
- 20 nucleotides
- Bulged bases
- 9EC3|1|I|U|404
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EC3_007 not in the Motif Atlas
- Homologous match to J3_8B0X_034
- Geometric discrepancy: 0.1561
- The information below is about J3_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9EC3|1|I|G|379
9EC3|1|I|G|380
9EC3|1|I|A|381
9EC3|1|I|A|382
9EC3|1|I|G|383
*
9EC3|1|I|U|399
9EC3|1|I|G|400
9EC3|1|I|C|401
9EC3|1|I|C|402
9EC3|1|I|G|403
9EC3|1|I|U|404
9EC3|1|I|A|405
9EC3|1|I|G|406
9EC3|1|I|A|407
9EC3|1|I|C|408
*
9EC3|1|I|G|420
9EC3|1|I|G|421
9EC3|1|I|U|422
9EC3|1|I|A|423
9EC3|1|I|C|424
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain U
- 50S ribosomal protein L24
Coloring options: