J3_9EC3_013

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

9EC3|1|I|A|1515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EC3_013 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1895

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.3

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9EC3|1|I|U|1475
9EC3|1|I|C|1476
9EC3|1|I|G|1477
9EC3|1|I|G|1478
9EC3|1|I|G|1479
9EC3|1|I|A|1480
9EC3|1|I|C|1481
*
9EC3|1|I|G|1512
9EC3|1|I|A|1513
9EC3|1|I|C|1514
9EC3|1|I|A|1515
9EC3|1|I|A|1516
*
9EC3|1|I|U|1533
9EC3|1|I|A|1534

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23