J3_9EC3_025

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

9EC3|1|a|U|864, 9EC3|1|a|A|866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EC3_025 not in the Motif Atlas

Homologous match to J3_8B0X_004

Geometric discrepancy: 0.1448

The information below is about J3_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

9EC3|1|a|C|817
9EC3|1|a|U|818
9EC3|1|a|A|819
9EC3|1|a|G|820
*
9EC3|1|a|C|850
9EC3|1|a|G|851
9EC3|1|a|U|852
9EC3|1|a|A|853
9EC3|1|a|G|854
*
9EC3|1|a|C|861
9EC3|1|a|A|862
9EC3|1|a|U|863
9EC3|1|a|U|864
9EC3|1|a|A|865
9EC3|1|a|A|866
9EC3|1|a|G|867

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8