J3_9ED0_001

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ED0_001 not in the Motif Atlas

Geometric match to J3_8P9A_068

Geometric discrepancy: 0.0723

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9ED0|1|2|A|40
9ED0|1|2|G|41
*
9ED0|1|2|C|481
9ED0|1|2|G|482
9ED0|1|2|C|483
9ED0|1|2|A2M|484
9ED0|1|2|A|485
9ED0|1|2|A|486
9ED0|1|2|U|487
*
9ED0|1|2|A2M|512
9ED0|1|2|G|513
9ED0|1|2|U|514

Current chains

Chain 2

rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

40S ribosomal protein S23