J3_9EHO_002
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGCCGACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9EHO|1|5|U|361, 9EHO|1|5|A|369, 9EHO|1|8|C|22
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|C|358
9EHO|1|5|G|359
9EHO|1|5|A|360
9EHO|1|5|U|361
9EHO|1|5|A|362
9EHO|1|5|G|363
9EHO|1|5|C|364
9EHO|1|5|C|365
9EHO|1|5|G|366
9EHO|1|5|A|367
9EHO|1|5|C|368
9EHO|1|5|A|369
9EHO|1|5|A|370
9EHO|1|5|G|371
9EHO|1|5|U|372
9EHO|1|5|A|373
9EHO|1|5|C|374
*
9EHO|1|5|G|381
9EHO|1|5|G|382
9EHO|1|5|A|383
9EHO|1|5|A|384
9EHO|1|5|A|385
9EHO|1|5|G|386
*
9EHO|1|8|C|20
9EHO|1|8|U|21
9EHO|1|8|C|22
9EHO|1|8|G|23
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain Y
- Large ribosomal subunit protein uL24
- Chain j
- Ribosomal protein L37
- Chain l
- Large ribosomal subunit protein eL39
Coloring options: