J3_9EHO_003
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EHO_003 not in the Motif Atlas
- Geometric match to J3_8GLP_025
- Geometric discrepancy: 0.0731
- The information below is about J3_8GLP_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.3
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 11
Unit IDs
9EHO|1|5|U|387
9EHO|1|5|U|388
9EHO|1|5|G|389
9EHO|1|5|A|390
9EHO|1|5|A|391
9EHO|1|5|A|392
9EHO|1|5|A|393
9EHO|1|5|G|394
*
9EHO|1|5|C|421
9EHO|1|5|G|422
*
9EHO|1|8|C|18
9EHO|1|8|A|19
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain Y
- Large ribosomal subunit protein uL24
- Chain l
- Large ribosomal subunit protein eL39
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