J3_9EHO_011
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EHO_011 not in the Motif Atlas
- Homologous match to J3_9AXU_018
- Geometric discrepancy: 0.1026
- The information below is about J3_9AXU_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.3
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9EHO|1|5|A|2446
9EHO|1|5|G|2447
9EHO|1|5|A|2448
9EHO|1|5|C|2449
9EHO|1|5|G|2450
*
9EHO|1|5|C|2584
9EHO|1|5|C|2585
*
9EHO|1|5|G|2589
9EHO|1|5|A|2590
9EHO|1|5|A|2591
9EHO|1|5|A|2592
9EHO|1|5|A|2593
9EHO|1|5|U|2594
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Large ribosomal subunit protein uL2
- Chain g
- Large ribosomal subunit protein eL34
- Chain p
- Large ribosomal subunit protein eL43
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