J3_9EHO_011

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|5|A|2446
9EHO|1|5|G|2447
9EHO|1|5|A|2448
9EHO|1|5|C|2449
9EHO|1|5|G|2450
*
9EHO|1|5|C|2584
9EHO|1|5|C|2585
*
9EHO|1|5|G|2589
9EHO|1|5|A|2590
9EHO|1|5|A|2591
9EHO|1|5|A|2592
9EHO|1|5|A|2593
9EHO|1|5|U|2594

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Large ribosomal subunit protein uL2

Chain g

Large ribosomal subunit protein eL34

Chain p

Large ribosomal subunit protein eL43