J3_9EHO_015

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUC*GUU*ACUAACA

Length

14 nucleotides

Bulged bases

9EHO|1|5|A|4428, 9EHO|1|5|U|4429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|5|U|4427
9EHO|1|5|A|4428
9EHO|1|5|U|4429
9EHO|1|5|C|4430
*
9EHO|1|5|G|4455
9EHO|1|5|U|4456
9EHO|1|5|U|4457
*
9EHO|1|5|A|4471
9EHO|1|5|C|4472
9EHO|1|5|U|4473
9EHO|1|5|A|4474
9EHO|1|5|A|4475
9EHO|1|5|C|4476
9EHO|1|5|A|4477

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13

Chain V

Large ribosomal subunit protein uL14