J3_9EHO_025

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CCGGUAG*CGAUCACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|AA|C|1835
9EHO|1|AA|C|1836
9EHO|1|AA|A|1837
9EHO|1|AA|G|1838
*
9EHO|1|AA|C|2550
9EHO|1|AA|C|2551
9EHO|1|AA|G|2552
9EHO|1|AA|G|2553
9EHO|1|AA|U|2554
9EHO|1|AA|A|2555
9EHO|1|AA|G|2556
*
9EHO|1|AA|C|2578
9EHO|1|AA|G|2579
9EHO|1|AA|A|2580
9EHO|1|AA|U|2581
9EHO|1|AA|C|2582
9EHO|1|AA|A|2583
9EHO|1|AA|C|2584
9EHO|1|AA|G|2585

Current chains

Chain AA

18S rRNA

Nearby chains

Chain GG

Ribosomal S5

Chain RR

40S ribosomal protein S16

Chain dd

Small ribosomal subunit protein eS28