J3_9EHO_030

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CGUC*GAUAA

Length

11 nucleotides

Bulged bases

9EHO|1|AA|A|1995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|AA|U|1967
9EHO|1|AA|G|1968
*
9EHO|1|AA|C|1977
9EHO|1|AA|G|1978
9EHO|1|AA|U|1979
9EHO|1|AA|C|1980
*
9EHO|1|AA|G|1992
9EHO|1|AA|A|1993
9EHO|1|AA|U|1994
9EHO|1|AA|A|1995
9EHO|1|AA|A|1996

Current chains

Chain AA

18S rRNA

Nearby chains

Chain BB

Small ribosomal subunit protein uS2

Chain DD

Small ribosomal subunit protein uS5

Chain SS

Small ribosomal subunit protein eS17